PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000218116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 377aa    MW: 42510.7 Da    PI: 9.4872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000218116genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09132155326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++Cr f+r GtC+yGd+C+F H+
  MDP0000218116 132 VRICRSFFRWGTCSYGDKCRFRHV 155
                    799******************885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-1269101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-769101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4747198IPR000571Zinc finger, CCCH-type
SMARTSM003560.417197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723129157IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4129156IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-7133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSTPLPTRQF FAQYLESGDN GRQIKHQIPT EEKEIEAQSD IKAQAFKKPR TSEAVSNLNA  60
ASGQNKMLPS YYKTQLCRKF QMXCCSSGQR CSFAHGXSDL RRTLRDAQGM ETEKGNLARR  120
TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RXSSFISIST AGGSAQFDCK  180
KSLELRKLCG YTTLESGSVQ ANSLTTYTRG NNASNRRMGV ATAYKQGQST HCNLEWNELE  240
KMSRIYADWI EDMPLLHGPP SKASGHAIGN RYSMFVSLEL ALDGKNHSNV VDISSLKNMK  300
HVHILHILEY PNLDEFAIYC AELARKVPQM SMMTIHVCFL GLQFVQDAKI FGEECPALKK  360
LPLKRGLKHS TTLGRQW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362553.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLM5XE533e-57M5XE53_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-11C3H family protein